代表性成果：
(1)论文
[1] Yan, X.; Zhang, A.; Guan, Y.; Jiao, J.; Ghanim, M.; Zhang, Y.; He, X.; Shi, R. Comparative Metabolome and Transcriptome Analyses Reveal Differential Enrichment of Metabolites with Age in Panax notoginseng Roots. Plants 2024, 13, 1441.
[2] Xie X ,Shi R ,Yan X , et al.Changes in Soil Chemistry and Microbial Communities in Rhizospheres of PlantedGastrodia elataon a Barren Slope and under a Forest[J].Forests,2024,15(2)
[3] Wang Yonggui, Xia Jing, Wang Zile, Ying Zhiping, Xiong Zhi, Wang Changming, Shi Rui.Combined analysis of multi-omics reveals the potential mechanism of flower color and aroma formation in Macadamia integrifolia#13;#13;[J].Frontiers in Plant Science,2023,131095644-1095644.
[4] Hu Faguang, Shi Rui, Fu Xingfei, Li Yanan, Li Guiping, Yang Yang, Liu Dexin, Luo Xinping, Bi Xiaofei, Dong Wenjiang.Transcriptome and metabolome profiling provides insight into the regulatory network of fruit coloration in Coffea arabica L[J].Scientia Horticulturae,2024,326112695-.
[5] Faguang Hu, Xiaofei Bi, Xingfei Fu, Yanan Li, Guiping Li, Yaqi Li, Dexin Liu, Yang Yang, Rui Shi, Wenjiang Dong. Comparative Metabolome Profiles and Antioxidant Potential of FourCoffea arabicaL. Varieties Differing in Fruit Color[J].Diversity,2023,15(6):
[6] Gu Haiyan, Shi Rui, Xu Chen, Lv Wenhao, Hu Xueyin, Xu Canxin, Pan Yuanbo, He Xiahong, Wu Aiguo, Li Juan. EGFR-Targeted Liposomes Combined with Ginsenoside Rh2 Inhibit Triple-Negative Breast Cancer Growth and Metastasis.[J].Bioconjugate chemistry,2023,34(6):
[7] Rui Shi; Shu Wang; Bingjie Xiong; Haiyan Gu; Huiling Wang; Chao Ji; Weijia Jia; Abraham R ami Horowitz; Wenjie Zhen; Jiftah Ben Asher; Xiahong He ; Application of Bioorganic Fertilizer on Panax notoginseng Improves Plant Growth by Altering the Rhizosphere Microbiome Structure and Meta bolism, Microorganisms, 2022, 10(2): 1-18
[8] Rui Shi; Liang Tao; Xinghao Tu; Chunsheng Zhang; Zhi Xiong; Abraham Rami Horowitz; Jiftah Ben Asher; Jun He; Faguang Hu; Metabolite Profiling and Transcriptome Analyses Provide Insight I nto Phenolic and Flavonoid Biosynthesis in the Nutshell of Macadamia Ternifolia, Frontiers in Genetics, 2022, 12(1): 1-13
[9] Mengyuan Gao, Xiunan Cao, Shujie Wei, Xuhua Huang, Huizi Ouyang,Yanxu Chang, Rui Shi*,Jun He,Quantitative Comparison and Chemical Profile of Different Botanical Parts of Panax notoginseng From Different Regions,Frontier in Nutrition,2022,Vol 9:841541
[10] Rui Shi,Bingjie Xiong,Shu He,Can Liu,Jiftah Ben-Asher,Abraham Rami Horowitz, Shu Wang & Xiahong He.Comparative metabolic profiling of root, leaf, fruit,and stem tissues of Panax notoginseng，International Journal of food Properties,2022,Vol 25, 1,1132-1145
[11] Rui Shi; Haiyan Gu; Shu He; Binjie Xiong; Youguo Huang; Abraham Rami Horowitz; Xiahong He; Comparative Metagenomic and Metabolomic Profiling of Rhizospheres of Panax notoginseng Grown under Forest and Field Conditions, Agronomy Journal, 2021, 11(12): 1-20
[12] Rui Shi; Haidong Bai; Biao Li; Can Liu; Zhiping Ying; Zhi Xiong; Wenlin Wang ; Combined T ranscriptome and Lipidomic Analyses of Lipid Biosynthesis in Macadamia ternifolia Nuts, life, 2021, 11(12): 0-1431
[13] Faguang Hu, Xiaofei Bi, Hongming Liu, Xingfei Fu, Yanan Li, Yang Yang, Xiaofang Zhang, Ruirui Wu, Guiping Li, Yulan Lv, Jiaxiong Huang, Xinping Luo, Rui Shi*.Transcriptome and carotenoid profiling of different varieties of Coffea arabica provides insights into fruit color formation. Plant Diversity, //doi.org/10.1016/j.pld.2021.11.005.
[14] Menglin Chen, Can Liu, Yulong An, Yan Li, Yunwu Zheng, Hao Tian, Rui Shi*, Xiahong He and Xu Lin. Red, Green, and Blue Light-Emitting Carbon Dots Prepared from Gallic Acid for White Light-Emitting Diodes Application. Nanoscale Advances. 2021,4(1):14-18
[15] Yu Ren, Jin Xie, Xiahong He, Rui Shi*,Can Liu . Preparation of Lignin-Based High-Ortho Thermoplastic Phenolic Resins and Fibers. Molecules. 2021, 26(13), 3993
[16] Yulong An, Can Liu, Yan Li, Menglin Chen, Yunwu Zheng, Hao Tian, Rui Shi*, Xiahong He and Xu Lin. Application of high-efficiency green fluorescent carbon dots prepared by acid catalysis in multicolour LEDs. RSC Advances.2021.11. 38033
[17] 严星�?刘屹�?熊冰�?张澳,黄佑�?何舒,何霞�?施蕊.不同栽培模式下人参萜类成分的对比研究[J].云南农业大学学报(自然科学),2023,38(01):129-135.
[18] 王勇,何舒,熊冰�?王慧�?贾凌�?何霞�?施蕊.不同栽培模式对人参根际土壤微生物多样性的影响研究[J].中草�?2021,52(17):5303-5310.
[19] 黎思琦,卢娜,乔进�?何霞�?施蕊.药食同源视角下云南省三七产业发展建议[J].绿色科技,2021,23(13):86-89.DOI:10.16663/j.cnki.lskj.2021.13.029.
[20] 乔进�?卢娜,黎思琦,施蕊.云南澳洲坚果产业可持续发展研究综述[J].南方农机,2021,52(14):38-40+50.
[21] 卢娜,黎思琦,乔进�? 施蕊.云南省澳洲坚果产业发展现状及对策[J].绿色科技,2021,23(08):263-265.DOI:10.16663/j.cnki.lskj.2021.08.088.
[22] 卢娜,黎思琦,乔进�?何霞�?施蕊.云南省林下经济与生态建设协调发展对策研究[J].云南科技管理,2021,34(03):7-9.DOI:10.19774/j.cnki.53-1085.2021.03.003.

(2)著作
[1]《蔬菜无土栽培关键技术》，机械工业出版社，978-711-172360-8，副主编�?023
[2]《澳洲坚果原植物鉴别图鉴》，中国林业出版社，978-7-5219-2146-5，主编，2023
[3]《经济林及林下作物高效栽培与管理》，中国农业出版社，978-7-109-28828-7，主编，2022
[4]《云南省林下中药材产业发展研究与实践》，中国林业出版社，978-7-5219-1854-0，主编，2022
[5]《园林园艺植物栽培》，东北林业大学出版社，978-7-5674-2475-3，主编，2021
[6]《澳洲坚果初加工技术》，中国农业科学技术出版社�?78-7-5116-4844-0，主编，2020
[7] 《辣木的规范化种植与开发利用》，中国林业出版社，78-7-5038-8489-4，主编，2016

(3)授权专利
3.1 国际专利
[1] 美国发明专利, 一种从澳洲坚果中提取棕榈油酸的方法及其应用, 20231108
[2] 美国发明专利, 一种澳洲坚果美白提取物及其制备方法, 202301
[3] 南非发明专利, 一种微生物促生剂及其应�? 20230329
[4] 南非发明专利, 一种澳洲坚果美白提取物及其制备方法, 20220729
[5] 南非发明专利, 一种林下种植有机三七的方法, 202205036
[6] 日本发明专利, 一种石斛的有机种植方法发明专利, 20231129
[7] 英国发明专利, 一种石斛的有机种植方法, GB2614365

3.2 中国专利
[1] 一种含有重楼提取物的组合物及其制备方法和应�? ZL 202211131925.0
[2] 一种植物防腐剂及其制备方法和应�? ZL 202211712793.0
[3] 一种含澳洲坚果果油和多肽的三七花精华液及其制备方法, ZL 202211717544.0
[4] 一种微生物促生剂及其应�? 202010756994.5
[5] 一种同时提取三七皂苷、三七黄酮和三七多糖的方法及其应�? 202011634547.9
[6] 一种滇牡丹多糖提取物及其制备方法和应用, 202010478758.1
[7] 一种澳洲坚果美白提取物及其制备方法, 202110593903.5
[8] 一种三七花提取物的制备方法及其应用, 202011505186.8
[9] 一种含豆腐果苷的制剂及其制备方法和应用, 202110604477.0
[10] 澳洲坚果青皮浸膏的制备方法及化妆�? 201210244385.7
[11] 一种三七茎叶提取物的制备方法及其应�? 202011509806.5
[12] 一种澳洲坚果果粕加工方法及其蛋白饮�? 202110712836.4
[13] 一种天麻的有机种植方法, 202111660318.9
[14] 一种铁皮石斛制品及其制备方�? 202111681863.6
[15] 一种重楼制品及其制备方法和应用, 202211170501.5
[16] 一种有助于提高黄精品质的黄精栽培方�? 202211176582.X
[17] 一种石斛的有机种植方法, 202111660326.3
[18] 一种林下种植育苗结�? 202023081639.7
[19] 一种林下种植灌溉设�? 202023054385.X
[20] 一种林下种植固定结�? 202023080200.2
[21] 一种林下种植大棚结�? 202023042767.0
[22] 一种滇牡丹根皮提取物及其制备方法和应用, 202010476367.6
[23] 一种滇牡丹果皮提取物及其制备方法和应用, 202010476375.0
[24] 一种从澳洲坚果中提取棕榈油酸的方法及其应用, 202110710928.9
[25] 澳洲坚果青皮浸膏的制备方法及化妆�? 201210244385.7
[26] 一种预防三高和癌症的保健油及其制备方法, 201510074580.3)
[27] 一种治疗神经衰弱和老年痴呆症的药物组合�? 201410551879.9
[28] 一种七彩红竹花青素提取�? 201310373354.6
[29] 一种麻竹银杏普洱速溶茶的制备, 201510112116.9
[30] 金铁锁四倍体植株的诱导方�? 201510668992.X
[31] 辣椒中同时提取辣椒油、色素和生物碱的方法及其应用, 201610737098.8
[32] 包装盒（柔肤水）, 201830618468.6
[33] 一种闻香笔, 201820344406.5

(4)标准
[1] 行业标准，《澳洲坚�?等级规格》，NYT3973-2021
[2] 企业标准,《林下黄精生态种植技术规程》，20230927
[3] 企业标准,《林下重楼生态种植技术规程》，20230927